Man, it seems so foreign to me the idea that people actually buy operating systems. XD
But yeah, when dual booting ubuntu and windows, its always best to install windows first. Not sure if you can do it with ubuntu first. So use Ubuntu for now, once you get vista, you probably reformat the drive, and install vista there. From that point on if you want to install ubuntu, you're best bet would be to use wubi (comes with the newest ubuntu) which lets you install ubuntu without partitioning your harddrive like a windows program.
As far as I know there aren't any real disadvantages, except for you have less space for files, seeing as you have two OS.